species:   Scscl
pid:       PID1687
parent:    Ssc-milR-163
paralog:   
locus:     NW_001820835.1:2416849-2416928
matures:   ['UCAGGCCUGUUUGUUAUGUUUG', 'AAUGGUCAAAUUGUGCGGGUG']
srr:       SRR12527896
genome:    /Users/jax/+Genomes/Fungal_genomes/Scscl.GCF_000146945.2_ASM14694v2.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527896.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527896.cram NW_001820835.1:2416849-2416928

3 out of bounds
16 alignments
13 proper strand
9 stranded perfect matches

**********************                                  *********************** 
UCAGGCCUGUUUGUUAUGUUUGAUGGGGAUGGUGAAGUUUAGUUUGGUAUAUACAUGAAAUGGUCAAAUUGUGCGGGUGU
..(.(((((((((...(((((.(((...(((.((((......)))).)))...))).)))))..))).....)))))).)
UCAGGCCUGUUUGUUAUGUUUG---------------------------------------------------------- l=22 a=7 c
----------------------------------------------------------AAUGGUCAAAUUGUGCGGGUG- l=21 a=0 c*
UCAGGCCUGUUUGUUAUGUUUG---------------------------------------------------------- l=22 a=7 ma
----------------------------------------------------------AAUGGUCAAAUUGUGCGGGUG- l=21 a=0 ma*

---------UUUGUUAUGUUUGAUGGG----------------------------------------------------- l=18 a=1 
-----CCUGUUUGUUAUGUUUGAUa------------------------------------------------------- l=20 a=1 
--AGGCCUGUUUGUUAUGUUUGAUa------------------------------------------------------- l=23 a=2 
UCAGGCCUGUUUGUUAUG-------------------------------------------------------------- l=18 a=1 
UCAGGCCUGUUUGUUAUGa------------------------------------------------------------- l=19 a=1 
UCAGGCCUGUUUGUUAUGUUUG---------------------------------------------------------- l=22 a=7 (c,ma)

mb-00011
ax-1001011
ku-01
ss-101111101100
fn-111
